[BiO BB] Re: paper
p.balaji at gmail.com
Fri Aug 19 05:15:21 EDT 2005
I am sure they meant high score segment pairs, i have never heard
of "high speed products"
On 8/18/05, Martin Gollery <marty.gollery at gmail.com> wrote:
> Yes, they mean 'High Scoring Pairs', not 'High Speed Products'.
> On 8/18/05, Marcos Oliveira de Carvalho <operon at cbiot.ufrgs.br> wrote:
> > Dear all,
> > Looking some papers about phylogenomic methods I found this reference:
> > However, in the paragraph below, I was very confused:
> > "More precisely, GBDP starts with an all-against-all pairwise
> > comparison of genomes using BLASTN (Altschul et al., 1990).
> > In a second step, a distance matrix is calculated from the
> > resulting HSPs **(High Speed Products)**.
> > Here, we studied a number of variants which are described in detail
> > below..."
> > High Speed Products?
> > I wonder they are not talking about "high score segment pairs" (HSSPs
> > abbreviated as HSPs).
> > cheers
> > Marcos
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> Martin Gollery
> Associate Director
> Center For Bioinformatics
> University of Nevada at Reno
> Dept. of Biochemistry / MS330
> Bioinformatics.Org general forum - BiO_Bulletin_Board at bioinformatics.org
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