Fwd: [BiO BB] How to FTP 34,000 protein files? Is it possible?
Lutfullah Kakakhel
lutfullah.kakakhel at gmail.com
Sun Dec 11 08:44:57 EST 2005
I just had a look at the ftp site given in the orignal message . The
filenames are actually symbolic links.
$ wget -m -c --retr-symlinks
ftp://ftp.rcsb.org/pub/pdb/data/structures/all/pdb
will retrieve them all in one go:
=================================================
--18:04:34--
ftp://ftp.rcsb.org/pub/pdb/data/structures/all/pdb/pdb160d.ent.Z
=> `ftp.rcsb.org/pub/pdb/data/structures/all/pdb/pdb160d.ent.Z'
==> CWD not required.
==> PASV ... done. ==> RETR pdb160d.ent.Z ... done.
Length: 34
100%[====================================>] 14,097 15.93K/s
18:04:37 (15.89 KB/s) -
`ftp.rcsb.org/pub/pdb/data/structures/all/pdb/pdb160d.ent.Z' saved [14,097]
--18:04:37--
ftp://ftp.rcsb.org/pub/pdb/data/structures/all/pdb/pdb160l.ent.Z
=> `ftp.rcsb.org/pub/pdb/data/structures/all/pdb/pdb160l.ent.Z'
==> CWD not required.
==> PASV ... done. ==> RETR pdb160l.ent.Z ... done.
Length: 34
100%[====================================>] 39,930 9.37K/s ETA
00:00
The directory structure saved is :
your_home_directory/ftp.rcsb.org/pub/pdb/data/structures/all/pdb
into which you should see all the downloaded files:
pdb05c1.noc.Z pdb0in3.noc.Z pdb100d.ent.Z pdb114d.ent.Z pdb131d.ent.Z
--Lutfullah
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