[BiO BB] clustering short sequences
bioinfosm at gmail.com
Mon Dec 12 11:38:03 EST 2005
I had a similar problem, but with dna sequences .. I finally used align0 of
fasta package .. what was the get-around you used ?
align0 worked pretty well for me, as I did not want to penalize end-gaps.
On 11/17/05, Narcis Fernandez-Fuentes <narcis at fiserlab.org> wrote:
> Hi all,
> Does anybody knows a program to sequentially cluster short protein
> fragments, between 8 to 14 residues long? I tried cd-hit, it works find
> in the range of 12 to 14 but below it crash. Any suggestion?
> Bioinformatics.Org general forum - BiO_Bulletin_Board at bioinformatics.org
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