[BiO BB] Comparing whole genome sequences

[Edith Schlagenhauf]

Hi,

you may have a look at the MUMmer software (tigr.org). Especially
at the NUCmer alignment script which allows for multiple reference
and multiple query sequences to be aligned in a many vs. many fashion.

HTH,
Edith

******************************************
Dr Edith Schlagenhauf
Bioinformatics
Institute of Plant Biology
University of Zurich
Zollikerstrasse 107
CH-8008 Zurich
SWITZERLAND

e-mail: ediths AT botinst DOT unizh DOT ch
Tel.:	+41 1 634 82 78
Fax :	+41 1 634 82 04
******************************************

On Tue, 20 Dec 2005, hamid wrote:

> I want to compare (align) whole genome of several organisms. How can I do
> that? there are several tools such as mVISTA that can align multiple
> preprocessed sequences but I want to compare my own organisms. for example
> if I want to compare 3 strains of brusella.
> Thanks
>
>
> _______________________________________________
> Bioinformatics.Org general forum  -  BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
>