[BiO BB] Patterns
Iddo Friedberg
idoerg at burnham.org
Fri Jun 17 13:31:54 EDT 2005
Sound like you might need a textbook first.
http://bioinformatics.org/faq/#books
The Chapter 10 in David Mount's book is a good start.
There are several motif databases, but using them depends on what you
call a "motif", and what is your actual goal is. Anything within the
range of PRINTS, BLOCKS, Pfam, PROSITE, 3D-motif and I-SITES can be
applied to your question, at some level. You might also want to look at
this page:
http://us.expasy.org/tools/#pattern
HTH,
Iddo
Nur'Aini Abdul Rashid wrote:
> Thank you... how do I go about searching the aticles... any tips...
>
>
>
> ----- Original Message ----- From: "Felipe Albrecht"
> <felipe.albrecht at gmail.com>
> To: "The general forum at Bioinformatics.Org"
> <bio_bulletin_board at bioinformatics.org>
> Sent: Thursday, June 16, 2005 8:37 PM
> Subject: Re: [BiO BB] Patterns
>
>
>> Yes, a structure can be represented by varius motifs.
>>
>> A motif represents a structure, but a structure dont nescessaly
>> represents only one motif. Exist some docs about this, but now I dont
>> know.
>>
>> Felipe Albrecht
>>
>> 2005/6/15, Nur'Aini Abdul Rashid <nuraini at cs.usm.my>:
>>
>>>
>>> Can multiple patterns(motif??) of a protein represents same
>>> structure or
>>> function. if it does do a dictionary of this knowledge exist?
>>>
>>>
>>> Nur'Aini binti Abdul Rashid
>>> Pusat Pengajian Sains Komputer
>>> Universiti Sains Malaysia
>>> Pulau Pinang.
>>> _______________________________________________
>>> Bioinformatics.Org general forum -
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>>>
>>>
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--
Iddo Friedberg, Ph.D.
The Burnham Institute
10901 N. Torrey Pines Rd.
La Jolla, CA 92037 USA
Tel: +1 (858) 646 3100 x3516
Fax: +1 (858) 713 9949
http://ffas.ljcrf.edu/~iddo
==========================
The First Automated Protein Function Prediction SIG
Detroit, MI June 24, 2005
http://ffas.burnham.org/AFP
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