[BiO BB] PUBMED --> Genes ??
Dan Bolser
dmb at mrc-dunn.cam.ac.uk
Thu Nov 3 10:04:35 EST 2005
Ann Loraine wrote:
> Also, I think you can get Pubmed ids from Entrez Gene records, which
> are downloadable from NCBI ftp site.
Yes. I think
ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/
gives me everything I need for a large set of "gene to PMID" mappings. I
can get an equivelent set from UNIPROT, making for a very large set.
Now what I am looking for is a PUBMED data set, linking PMID to keywords.
Cheers,
Dan.
>
> -Ann
>
>>
>>On 11/2/05, Dan Bolser <dmb at mrc-dunn.cam.ac.uk> wrote:
>>
>>>Hello,
>>>
>>>After playing with some stuff on the NCBI / PubMed site, I wonder if
>>>there is a list mapping PUBMED ID to Gene ID (of some kind, like refseq
>>>for example)?
>>>
>>>For a given gene I would like to look up all the associated literature.
>>>Any recomendations on how to do that?
>>>
>>>Is there a tab delimited pubmed database that links pubmed id to
>>>keywords for example?
>>>
>>>Cheers,
>>>Dan.
>>>
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>
>
>
> --
>
> Ann Loraine
> Assistant Professor
> Section on Statistical Genetics
> University of Alabama at Birmingham
> http://www.ssg.uab.edu
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