[BiO BB] In search of complete conserved genes....

Diego Martinez sariego9 at yahoo.com
Wed Oct 5 12:50:50 EDT 2005


Or there is the swissprot HAMAP
tool that classifies families in 
a kinda "phylogenetic profile" ala
Eisenberg...

http://us.expasy.org/sprot/hamap/

Diego



--- Iddo Friedberg <idoerg at burnham.org> wrote:

> Look for a recent paper by Gill Bejerano, Jim Kent and David Haussler in 
> Nature Methods. I think you'll find what you need in there.
> 
> 
> dwivedbz at notes.udayton.edu wrote:
> 
> > Hello everyone!
> >  
> > I am looking for complete conserved protein-coding genes that are 
> > widely distributed among bacterial species (should be present in 
> > atleast 6-7 bacterial species). Also, I need such genes to show high 
> > degree of sequence similarities in the species they exist. I would 
> > appreciate if you could help me out. 
> >  
> > Thanks!
> >  
> > Bhakti
> >
> >------------------------------------------------------------------------
> >
> >_______________________________________________
> >Bioinformatics.Org general forum  -  BiO_Bulletin_Board at bioinformatics.org
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> >  
> >
> 
> 
> -- 
> 
> Iddo Friedberg, Ph.D.
> Burnham Institute for Medical Research
> 10901 N. Torrey Pines Rd.
> La Jolla, CA 92037
> Tel: (858) 646 3100 x3516
> Fax: (858) 713 9930
> http://ffas.ljcrf.edu/~iddo
> 
> _______________________________________________
> Bioinformatics.Org general forum  -  BiO_Bulletin_Board at bioinformatics.org
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> 


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