[BiO BB] Most common protein fold?

paul P.Curley at westminster.ac.uk
Thu Oct 6 13:46:43 EDT 2005


Hi Folks,

Quick question. Does anyone know by any chance know how I can find the
number of individual proteins within
each superfamily and family of the SCOP database to get an idea of which
folds are the most
common and which are very rare?

Any help much appreciated.

Best Regards,

Paul

-----Original Message-----
From: bio_bulletin_board-bounces+p.curley=wmin.ac.uk at bioinformatics.org
[mailto:bio_bulletin_board-bounces+p.curley=wmin.ac.uk at bioinformatics.or
g]On Behalf Of Boris Steipe
Sent: Wednesday, October 05, 2005 9:57 AM
To: The general forum at Bioinformatics.Org
Subject: Re: [BiO BB] In search of complete conserved genes....


This is what COGS was built for:

http://www.ncbi.nlm.nih.gov/COG/

"Interesting" interface though. Probably the list you might want to
work with is
http://www.ncbi.nlm.nih.gov/COG/old/palox.cgi


Boris


dwivedbz at notes.udayton.edu wrote:


> Hello everyone!
>  I am looking for complete conserved protein-coding genes that are
> widely distributed among bacterial species (should be present in
> atleast 6-7 bacterial species). Also, I need such genes to show
> high degree of sequence similarities in the species they exist. I
> would appreciate if you could help me out.  Thanks!
>  Bhakti
>
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