[BiO BB] protein family databases (Interpro)

Martin Gollery marty.gollery at gmail.com
Mon Oct 17 18:10:08 EDT 2005

Interpro would be a good choice because it is becoming so popular for genome
annotation projects.


On 10/16/05, Andrea Franceschini <atariml at gmail.com> wrote:
> We are developing a software to automatically retrive some family/domain's
> annotations of a set of proteins.
> In particular we are interested to identify the possible relations between
> the different families.
> To accomplish this task we are thinking to use Interpro as source for the
> annotations.
> What do you think about the parent/child and contains/found in relations
> present in Interpro ?
> Do you have any suggestion about other databases that we should use ?
> Do you have any suggestion about other possible information that we could
> provide on a particular set of proteins (given us as input by the user) ?
> Thankyou very much
> Andrea Franceschini
> University Politecnico of Milan (Italy)
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Martin Gollery
Associate Director
Center For Bioinformatics
University of Nevada at Reno
Dept. of Biochemistry / MS330
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