[BiO BB] which blast server

Iddo Friedberg idoerg at burnham.org
Fri Oct 28 12:09:00 EDT 2005

Dr. Christoph Gille wrote:

>I want my computer program to invoke  a BLAST search in
>Swissprot+TREMBL on a remote blast server
>and to fetch the blast result.
>Due to fire-wall restrictions I can only use the http port.
>I would prefere XML formated output
>Which server would you recommend?
>Many thanks
>Bioinformatics.Org general forum  -  BiO_Bulletin_Board at bioinformatics.org

NCBI BLAST seems to fulfill all your requirements: port 80 and an XML output

Iddo Friedberg, Ph.D.
Burnham Institute for Medical Research
10901 N. Torrey Pines Rd.
La Jolla, CA 92037 USA
Tel: +1 (858) 646 3100 x3516
Fax: +1 (858) 713 9949

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