[BiO BB] Sequence alignment to whole genome sequence

[Martin Gollery]

Hi Edith,

I would recommend BLAT for this.

Cheers,
Marty

On 9/14/05, Edith Schlagenhauf <ediths at unizh.ch> wrote:
> 
> Hi,
> 
> what is/are the most appropriate tools/software to align
> hundreds of 700 bp sequences to a whole genome
> sequence (around 8Mb) of a closely related species/strain?
> 
> TIA for your input,
> Edith
> 
> 
> ******************************************
> Dr Edith Schlagenhauf
> Bioinformatics
> Institute of Plant Biology
> University of Zurich
> Zollikerstrasse 107
> CH-8008 Zurich
> SWITZERLAND
> 
> e-mail: ediths AT botinst DOT unizh DOT ch
> Tel.: +41 1 634 82 78
> Fax : +41 1 634 82 04
> ******************************************
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-- 
-- 
Martin Gollery
Associate Director
Center For Bioinformatics
University of Nevada at Reno
Dept. of Biochemistry / MS330
775-784-7042
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