[BiO BB] Sequence alignment to whole genome sequenc

[Gary Van Domselaar]

Hi Edith,

If you are trying to align sequence reads to a to a reference genome, then 
NUCmer (part of MUMmer) would be appropriate.

Regards,

g.


On Wed, 14 Sep 2005, Edith Schlagenhauf wrote:

> Hi,
>
> what is/are the most appropriate tools/software to align
> hundreds of  700 bp sequences to a whole genome
> sequence (around 8Mb) of a closely related species/strain?
>
> TIA for your input,
> Edith
>
>
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> Dr Edith Schlagenhauf
> Bioinformatics
> Institute of Plant Biology
> University of Zurich
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-- 
Gary Van Domselaar, PhD
Associate Director, Bioinformatics.Org
gary at bioinformatics.org