[BiO BB] WU Blast installation

[J.W. Bizzaro]

kannaiah at bsd.uchicago.edu wrote:
> #!/bin/bash
> (export BLASTDB=/biodb1/blast/ncbi/ntseq:/biodb1/blast/ncbi/pepseq;\
> WUBLASTMAT=/apps/local/runtime/bin32/linux/wublast/matrix;\
> WUBLASTFILTER=/apps/local/runtime/bin32/linux/wublast/filter;\
> PATH=$PATH:/apps/local/runtime/bin32/linux/wublast/blastp)

The semicolon separates commands, so you're only exporting the first variable 
BLASTDB.  The others won't appear in subsequent shells.  Try this:

#!/bin/bash
export BLASTDB=/biodb1/blast/ncbi/ntseq:/biodb1/blast/ncbi/pepseq \
WUBLASTMAT=/apps/local/runtime/bin32/linux/wublast/matrix \
WUBLASTFILTER=/apps/local/runtime/bin32/linux/wublast/filter \
PATH=$PATH:/apps/local/runtime/bin32/linux/wublast/blastp

Jeff
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J.W. Bizzaro
Bioinformatics Organization, Inc. (Bioinformatics.Org)
E-mail: jeff at bioinformatics.org
Phone:  +1 508 890 8600
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