[BiO BB] Finding (Predicting) a Proein family in a new organism using only Bioinformatics approach
hamid at ibb.ut.ac.ir
Sat Apr 29 01:24:15 EDT 2006
I have a question regarding to find a new protein family in a new organism.
Suppose we have the whole proteome of organism "O", although we have 200
proteins regarding to protein family "F" those belongs to several subunits
of complete system "S". We doubt whether there is system "S" in organism
"O" or not. I have done a multiple alignment among whole proteome of "O"
(almost 1200 proteins) and all the proteins belonging to "F" acheieved from
several organisms those are proven to have system "S" in them. I achieved a
huge alignment file. Now I do not know how can I find that are there any
proteins in "O" proteome relating to "F" family.
Please guide me in this regard.
Hamid( Behnam )Nikbakht,
M.Sc of Cell and Molecular Sciences
Laboratory of Biophysics and Molecular Biology
Institute of Biochemistry and Biophysics
University of Tehran
Tel: (+98 21) 664-98672
Fax: (+98 21) 669-56985
Alt. E-Mail : hamid at ibb.ut.ac.ir
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