[BiO BB] Restriction sites frequencies in mouse genome

[Boris Steipe]

However if it's only frequency for a single (or a handful)  
restriction sequences, a Perl one-liner or even grep will help (but  
you have to be careful about your input file format and consider non- 
palindromic sites,multiple occurrences in one line, overlapping  
occurrences and occurences that break across lines). If that's what  
you need, I can post a solution.
HTH

Boris



On 28 Aug 2006, at 09:30, Martin Gollery wrote:
> [...]

> I am searching for a way to calculate restriction sites frequency  
> in mouse
> genome (so sequences from 6 to 13bp).
[...]
>
> Thanks a lot for your help,
> Best regards,
>
> Benoît Varvenne,
> Bioinformatics pearson in charge,
> Genoway Lyon - France
>
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> Martin Gollery
> Associate Director
> Center For Bioinformatics
> University of Nevada at Reno
> Dept. of Biochemistry / MS330
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