[BiO BB] (no subject)
sravan sravan
sravan_111 at rediffmail.com
Mon Feb 6 05:46:51 EST 2006
Dear friends,
I am working to study microsatellites. In this regard, I have to generate the
equivalent classes of repeat motifs. Hence, I request for your assistance by providing me
the source code, methodology or algorithm in detail / pseudo code.
Ex: AA,AC,AG,AT,CA,CC,CG,CT,GA,GC,GG,GT,TA,TC,TG,TT :
AC : AC,CA,GT,TG
AG : AG,GA,CT,TG
------------------------------------------------------------------
In addition: For Tri,Tetra,Penta,Hexa Motifs:
Ex: ACG,CGA,GAC AGC,GCA,CAG should be in two seperate classes. But I am
getting in single class due to the equal nucleotide composition. Please suggest me some
solution for this and any additional issues explored by you.
I appreciate your early response, as it is an urgent requirement.
Thank you very much.
Regads.
Sravan.
Dear Bio_Bulletin_Board,
This is an urgent requirement. Hence, I request for your early response.
Thanks.
Sravan.
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