[BiO BB] collecting all genes with a given GO id or its child terms

Maximilian Haeussler maximilianh at gmail.com
Tue Feb 21 17:18:41 EST 2006

I wonder if you couldn't simply download the arabidopsis GO from
import it into (wouuw...) Excel and filter by the 4th field (=GO id)...? The
1st fields would then contain the corresponding gene id.

Oh. You're not a biologist. So replace Excel by BioPerl or Python or AWK.

Take care,

On 21/02/06, Ann Loraine <aloraine at gmail.com> wrote:
> Hi,
> Maybe somebody on the list could point me in the right direction?
> I'm looking for something that takes a list of GO ids and then returns
> a list of all Arabidopsis 'AGI' codes (gene ids, e.g., AT4G30490 )
> that have been annotated with a GO id on the list and/or the child
> term of any GO term on the list.
> All the best,
> Ann Loraine
> --
> Ann Loraine
> Assistant Professor
> Section on Statistical Genetics
> University of Alabama at Birmingham
> http://www.ssg.uab.edu
> http://www.transvar.org
> _______________________________________________
> Bioinformatics.Org general forum  -  BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board

Maximilian Haeussler,
CNRS Gif-sur-Yvette, Paris
tel: +33 6 12 82 76 16
icq: 3825815  -- msn: maximilian.haeussler at hpi.uni-potsdam.de
skype: maximilianhaeussler
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.bioinformatics.org/pipermail/bbb/attachments/20060221/73e80203/attachment.html>

More information about the BBB mailing list