[BiO BB] Fasta file of KEGG pathways

[govind mk]

hi
   
  Follow this site ...you could use Kegg's wsdl and write small scripts that could generate the required output
   
  http://www.genome.jp/kegg/soap/
   
  -govind

Samantha Fox <bioinfosm at gmail.com> wrote:
  Is there a good quick and dirty way to find the genes involved in a particular KEGG pathway .. for a particular organism, say Drosophila ?

Cheers...

  On 1/19/06, govind mk <mkgovindis at yahoo.com> wrote:    Is this what you are looking for
   
  ftp://ftp.genome.jp/pub/kegg/tarfiles/ 
   
  -govind
    

forward at hongyu.org wrote:
  I am wondering whether anyone has a downloable file containing all protein
sequences of KEGG pathway ( e.g., in FASTA format)? I remember seeing it
somewhere on KEGG website, but I couldn't find it anymore.

Basically, I want to BLAST my query sequences against the file to find
out the pathway information of my sequences. I can't use the web 
interface of KEGG directly because I have too many sequences to query. It
would be nice if I can download a local copy.

Thanks!

-- 
Hongyu Zhang, Ph.D.
Computational Biologist
Ceres Inc.
1535 Rancho Conejo Blvd 
Thousand Oaks, CA 91320
Phone: (805)376-6504 ext 1204



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