[BiO BB] statistics for prokaryotic genomes

lichunjiang lichunjiang at sibs.ac.cn
Thu Jul 13 21:05:41 EDT 2006



hi,
There's a codon usage database online:
http://www.kazusa.or.jp/codon/A.html
Do you use this for GC content
search?
Cheers,
Lichun


Bhakti Dwivedi wrote:
> Hello everyone,
> 
> Does anyone know where to find
the statistics in general for a prokaryotic
> genome. I am looking
for the parameters such as rate of substitution,
> transition
transversion rate ratio and GC content for the  photosynthetic
>
prokaryotic genomes. I found the GC content, but somehow I could't
locate
> the other two parameters. If anybody know the database or
publications
> that
> has the information about the
parameters (the one that I mentioned above)
> of
> a
prokaryotic genome in general, please let me know. I would really
> appreciate it.
> 
> Thanks!
>
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-- 
lichunjiang at sibs.ac.cn
Institute of
Biochemistry and Cell Biology,
Shanghai Institutes for Biological
Sciences,
Chinese Academy of Sciences
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