[BiO BB] Quantifying protein Domains En Mass

Daniel Harari hararid at bgu.ac.il
Mon Jun 5 03:36:37 EDT 2006


I am after a way in which I can analyze large data sets of protein 
sequences, where the readout is a quantification of different protein 
domains that are found within a given list of sequences (e.g. a list of 
500 protein sequences in FASTA format).  Preferably the output would be 
at the systems level (e.g. 230 Tyrosine Kinase domains) rather than that 
describing domains only at a protein-by protein level.



Daniel Harari, Ph.D.
Rubin Lab.
National Institute for Biotechnology in the Negev
Building 39, room -113 
Ben-Gurion University of the Negev
Beer-Sheva 84105, Israel 

Email: hararid at bgu.ac.il
Tel: 08-6477180
Fax: 08-6472983

More information about the BBB mailing list