[BiO BB] note or error in formatdb ?

[päivi siivola]

Hi!

I ran to same kind of problem. Formatdb is sensitive about the title line of the fasta formatted sequence. (Title line= line starting with >). If I remember correct, I got the same kind error when my title line was not "FASTA Defline Format". 

Read from the page 
http://bioinformatics.ubc.ca/resources/tools/?name=formatdb  
the section "FASTA Defline Format". 

Hope it helps !

T: Päivi 




Carlos Viana kirjoitti 06.06.2006 kello 03:23:
> Hi members,
> 
> Today, I performed formatdb tool with the following line command:
> 
> >>>> formatdb -i file.fasta -o T -p T
> 
> But I had this message in formatdb.log:
> 
> "NOTE: ncbiapi [000.000] SeqIdParse Failure at >gi|200001"
> 
> So, anyone know what kind of message is this?
> Is this an error or just a warning?
> I performed with versions 2.2.12 and 2.2.14.
> 
> Thanks,
> cviana


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