[BiO BB] TM-HMM Web service for class?
aloraine at gmail.com
Wed Jun 7 11:50:49 EDT 2006
Thank you very much.
Would it be possible to access the algorithm using a non-Web page interface?
Students will be accessing the data programmatically, from inside an
interpreter (python or R) and not a Web browser. (The Web page
interface would be used mainly to check code and understanding.)
On 6/7/06, Yaoqi Zhou <yqzhou at buffalo.edu> wrote:
> Try THUMBUP at http://theory.med.buffalo.edu
> Yaoqi Zhou, Associate Professor
> **CHECK out Newly UPDATED webpage** on
> Department of Physiology and Biophysics
> University at Buffalo, State University of New York
> 124 Sherman Hall, Buffalo, NY 14214
> (716) 829-2985 Fax (716) 829-2344
> Email: yqzhou at buffalo.edu
> NEW Office/Lab Address: 306/308 Cary Hall
> On Jun 7, 2006, at 11:33 AM, Ann Loraine wrote:
> > Hi,
> > I'm looking for a Web service that will let me upload a protein
> > sequence (can't use ids, sorry...these are gene predictions) and then
> > retrieve results from TM-HMM or a similar program that predicts
> > membrane-spanning regions and topology.
> > This is for a class demo and also for students doing term projects.
> > Any advice would be much appreciated!
> > Yours,
> > Ann
> > --
> > Ann Loraine
> > Assistant Professor
> > Section on Statistical Genetics
> > University of Alabama at Birmingham
> > http://www.ssg.uab.edu
> > http://www.transvar.org
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Section on Statistical Genetics
University of Alabama at Birmingham
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