[BiO BB] SCOp ids from PDB id

[Tolga Can]

You can try the following address:

http://scop.berkeley.edu/search.cgi?

or, download the following parseable SCOP file and locate your PDB ids in
that file:

http://scop.mrc-lmb.cam.ac.uk/scop/parse/dir.cla.scop.txt_1.69

Tolga Can
tcan at ceng.metu.edu.tr
 

-----Original Message-----
From: bio_bulletin_board-bounces+tcan=ceng.metu.edu.tr at bioinformatics.org
[mailto:bio_bulletin_board-bounces+tcan=ceng.metu.edu.tr at bioinformatics.org]
On Behalf Of Pankaj
Sent: 22 Haziran 2006 Perşembe 12:23
To: bio; bioperl
Subject: [BiO BB] SCOp ids from PDB id


Hi all,
I have a few PDB ids.
I want to know whether these structures are related or not.
One way was to do it by calculating RMSD among all of them and seeing if
they r related or not.
Other way was to get their SCOP id's and comapre if they belong to same SCOP
family.
My question is given a PDB id, how do I get its SCOP id?
Thanking all in advance,

Pankaj Khurana
Research Scholar
National Institute of Immunology
New Delhi
India
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