Ryan Golhar golharam at umdnj.edu
Mon Mar 6 00:14:38 EST 2006

If you have the mRNA from start to stop codon, you can use the transeq
from EMBOSS to translate the sequence for you.  It's a very
straight-forward tool.  I use it in a number of scripts to do exactly

-----Original Message-----
From: bio_bulletin_board-bounces+golharam=umdnj.edu at bioinformatics.org
[mailto:bio_bulletin_board-bounces+golharam=umdnj.edu at bioinformatics.org
] On Behalf Of Hongyu Zhang
Sent: Thursday, March 02, 2006 9:33 PM
To: bio_bulletin_board at bioinformatics.org
Subject: [BiO BB] API to NCBI

Does anyone have a handy script to retrieve the peptide sequence
translation for any given NCBI mRNA GI number? Thanks!

Hongyu Zhang, Ph.D.
Computational Biologist
Ceres Inc.
1535 Rancho Conejo Blvd
Thousand Oaks, CA 91320
Phone: (805)376-6504 ext 1204

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