[BiO BB] API to NCBI

[Ryan Golhar]

If you have the mRNA from start to stop codon, you can use the transeq
from EMBOSS to translate the sequence for you.  It's a very
straight-forward tool.  I use it in a number of scripts to do exactly
this.



-----Original Message-----
From: bio_bulletin_board-bounces+golharam=umdnj.edu at bioinformatics.org
[mailto:bio_bulletin_board-bounces+golharam=umdnj.edu at bioinformatics.org
] On Behalf Of Hongyu Zhang
Sent: Thursday, March 02, 2006 9:33 PM
To: bio_bulletin_board at bioinformatics.org
Subject: [BiO BB] API to NCBI


Does anyone have a handy script to retrieve the peptide sequence
translation for any given NCBI mRNA GI number? Thanks!

-- 
Hongyu Zhang, Ph.D.
Computational Biologist
Ceres Inc.
1535 Rancho Conejo Blvd
Thousand Oaks, CA 91320
Phone: (805)376-6504 ext 1204



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