[BiO BB] Sequence analysis help

[Boris Steipe]

To reconstruct ancestral sequences, you could use the PAMP method of  
the PAML package,
    http://abacus.gene.ucl.ac.uk/software/paml.html

HTH
Boris


On 24 Mar 2006, at 09:17, Anney Che wrote:

> Hi Everyone,
>
> I have a question about sequence analysis.
>
> I have a set of sequential HIV-1 sequences and I will like to find the
> primordial sequence of the sequence.
>
> Any advice will be greatly appreciated.
>
> Thanks,
>
> Anney
>
>
>
>
> Anney Che, M.S.
> Biocomputing Specialist
> Laboratory of Molecular Microbiology (LMM)
> National Institute of Allergy and Infectious Diseases (NIAID)
> 9000 Rockville Pike, Bldg 4, Room 301
> Bethesda, MD 20892
> Phone: 301-451-2851
> Fax: 301-280-2716
>
>
> _______________________________________________
> Bioinformatics.Org general forum  -   
> BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board