[BiO BB] DILS06 - List of accepted papers and Call for posters

[Ulf Leser]

DILS 2006
3rd International Workshop on Data Integration for the Life Sciences
European Bioinformatics Institute, UK
20. - 22.7.2006


Call for Participation
======================
  Registration is now open for the DILS06. Please go to:
    http://www.informatik.hu-berlin.de/dils2006/index.html

  Note: Early registration deadline is June, 7th, 2006


Call for Posters
================
  DILS06 will feature a poster session. Poster abstracts will be presented
  on the DILS website, and selected posters will be given the oppurtunity
  for an oral flash presentation. Please send poster abstracts directly to:
    leser at informatik.hu-berlin.de

  Deadline for poster abstract submission is May, 10th, 2006.


Keynotes
========
  Victor Markowitz
  "An Application Driven Perspective on Biological Data Integration"

  James H. Kaufman
  "Towards a National Healthcare Information Infrastructure"


Accepted Papers
===============

Towards an Automated Analysis of Biomedical Abstracts
  Barbara Gawronska, Erlendsson Björn, Björn Olsson

A method for similarity-based grouping of biological data
  Vaida Jakoniene, David Rundqvist, Patrick Lambrix

Improving Text Mining with Controlled Natural Language: A Case Study for
Protein Interactions
  Tobias Kuhn, Loic Royer, Norbert E. Fuchs, Michael Schroeder

An Information Management System for Collaboration within Distributed
Working Environment
  Maria Samsonova, Andrei Pisarev, Konstantin Kozlov, Ekaterina
  Poustelnikova, Arthur Tkachenko

SIBIOS Ontology System: A Robust Package for Biological Data Integration
  malika mahoui, Zina Ben Miled, Mindi Dippold, Bing Yang, Srinivasan
  Sriram

On Querying OBO Ontologies using a DAG Pattern Query Language
  Amarnath Gupta, Simone Santini

Using Term Lists and Inverted Files to Improve Search Speed for Metabolic
Pathway Databases
  Greeshma Neglur, Robert Grossman, Natalia Maltsev, Clement Yu

Data Object Models for Genome Annotation, Validation and Alternative
Splicing
  Sven Mielordt, Jürgen Kleffe

Link Discovery in Graphs Derived from Biological Databases
  Petteri Sevon, Petteri Hintsanen, Lauri Eronen, Kimmo Kulovesi, Hannu
  Toivonen

BioFuice: Mapping-based data integration in bioinformatics
  Toralf Kirsten, Erhard Rahm

SNP-Converter: an ontology-based mechanism to reconcile heterogeneous SNP
descriptions for pharmacogenomic studies
  Adrien Coulet, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Pascale
  Benlian, Amedeo Napoli

Data Access and Integration in the ISPIDER Proteomics Grid
  Lucas Zamboulis, Hao Fan, Khalid Belhajjame, Jennifer Siepen, Andrew
  Jones, Nigel Martin, Alexandra Poulovassilis, Simon Hubbard, Suzanne
  Embury, Norman Paton

A cell-cycle knowledge integration framework
  Erick Antezana, Elena Tsiporkova, Vladimir Mironov, Martin Kuiper

An extensible light-weight XML-based monitoring system for sequence
databases
  Dieter Van de Craen, Frank Neven, Kerstin Koch

Arevir: a secure platform for designing personalized antiretroviral
therapies against HIV
  Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen Schülter, Joachim
  Büch, Saleta Sierra-Aragon, Martin Däumer, Daniel Hoffmann, Rolf Kaiser,
  Thomas Lengauer, Joachim Selbig

Collection-Oriented Scientific Workflows for Integrating and Analyzing
Biological Data
  Shawn Bowers, Timothy McPhillips, Bertram Ludäscher

Towards a Model of Provenance in Scientific Workflows
  Shirley Cohen, Sarah Cohen Boulakia, Susan Davidson

The Distributed Annotation System for Integration of Biological Data
  Andreas Prlic, Ewan Birney, Tony Cox, Thomas Down, Rob Finn, Stefan
  Graef, David Jackson, Andreas kahari, Eugene Kulesha, Roger Pettett,
  James Smith, Jim Stalker, Tim Hubbard

SABIO-RK: Integration and Curation of Reaction Kinetics Data
  Ulrike Wittig


Accepted Short Papers
=====================

Ontology Analysis on Complexity and Evolution Based on Conceptual Model
  Zhe Yang, Dalu Zhang, Chuan Ye

Distributed Execution of Workflows in the INB
  Ismael Navas-Delgado, Antonio J. Perez, Jose F. Aldana-Montes, Oswaldo
  Trelles

Knowledge networks of biological and medical data; an exhaustive and
flexible solution to model life sciences domains
  Sascha Losko, Karsten Wenger, Wenzel Kalus, Andrea Ramge, Jens Wiehler,
  Klaus Heumann

On characterizing and addressing mismatches in scientific workflows
  Khalid Belhajjame, Suzanne M. Embury, Norman W. Paton


Sponsors
========
  We are grateful to our sponsors
  - Microsoft
  - IBM
  - EBI Industry Program
  - Metanomics in Plant Biotech
  - Metanomics Health in Pharma & Nutrition
  - Schering AG