[BiO BB] A tool for gene identification..

[Iddo Friedberg]

Which databases have you tried blasting against? Have you tried a full 
genomic database like Ensembl or the human genome at Santa Cruz?

./I


Mhmoud Elhefnawi wrote:

> Dear colleagues,
> Our lab isolated a 196 bp fragment from humans  from more than one 
> cell type ( part of a gene that is an oncogene for cancer). Conducting 
> BLAST searches of all types resulted in no homology to any published 
> human gene.  Is there some tool that can identify the human genome to:
> 1) locate on which chromosome is this sequence?
> 2) enable us to get the rest of the sequence of that gene?
> 3)  predict this gene based on the sequence submitted?
>  
> Your help is very highhly appreciated.
> Thanks,
> Mahmoud
>
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Iddo Friedberg, Ph.D.
Burnham Institute for Medical Reseach
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