[BiO BB] A tool for gene identification..

Maximilian Haeussler maximilianh at gmail.com
Tue May 2 10:03:21 EDT 2006


sorry should get my acronyms right... :-)
Of course, I meant ssaha instead of ssh:
http://trace.ensembl.org/cgi-bin/tracesearch
http://www.ncbi.nlm.nih.gov/BLAST/

On 02/05/06, Maximilian Haeussler <maximilianh at gmail.com> wrote:
> You could also try to SSH  (fast blast) against all _traces_,
> everything in any genome or any other sequences (nr).
>
> -max
>
> On 01/05/06, Mhmoud Elhefnawi <mahef111 at link.net> wrote:
> >
> > Dear colleagues,
> > Our lab isolated a 196 bp fragment from humans  from more than one cell type
> > ( part of a gene that is an oncogene for cancer). Conducting BLAST searches
> > of all types resulted in no homology to any published human gene.  Is there
> > some tool that can identify the human genome to:
> > 1) locate on which chromosome is this sequence?
> > 2) enable us to get the rest of the sequence of that gene?
> > 3)  predict this gene based on the sequence submitted?
> >
> > Your help is very highhly appreciated.
> > Thanks,
> >
> > Mahmoud
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> >
> >
> >
>


--
Maximilian Haeussler,
CNRS Gif-sur-Yvette, Paris
tel: +33 6 12 82 76 16
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skype: maximilianhaeussler



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