[BiO BB] GOslim
Txema Gonzalez Izarzugaza
biopctgi at yahoo.es
Wed May 31 13:24:03 EDT 2006
Hello everyone!
Does anybody know how I should generate a GOslim ontology using the
map2slim script?
I have tried this: "map2slim GOslim.obo gene_ontology.obo
gene_association.fb"
where:
GOslim.obo is the GO slim I have already downloaded from the GO site.
gene_ontology.obo, is the full GO ontology
gene_association.fb is the association file, also dowloaded from the GO
site.
It seems to run ok, but it generates loads of errors like this one:
<error>
<message>illegal header entry: %chondroitin sulfate metabolism ;
GO:0030204 ; synonym:chondroitin sulphate metabolism < chondroitin
sulfate proteoglycan metabolism ; GO:0050654</message>
<file>goslim_generic.obo</file>
<parse_class>GO::Parsers::obo_text_parser</parse_class>
</error>
Does anybody know what is happening?
Thanks in advance
Regards
Txema
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