[BiO BB] Hierarchical Probe Design

Bossers, Alex Alex.Bossers at wur.nl
Tue Nov 7 02:13:32 EST 2006


Try this. It's the HPD you are looking for.








Van: bio_bulletin_board-bounces+alex.bossers=wur.nl at bioinformatics.org
[mailto:bio_bulletin_board-bounces+alex.bossers=wur.nl at bioinformatics.or
g] Namens Cox, Mike
Verzonden: vrijdag 3 november 2006 16:45
Aan: BiO_Bulletin_Board at bioinformatics.org
Onderwerp: [BiO BB] Hierarchical Probe Design


Dear All,

Was wondering whether anyone knew of a suitable program for preparing
hierarchical groups of probes based on alignments of DNA, such as
Hierarchical Probe Designer:

Design of long oligonucleotide probes for functional gene detection in a
microbial community; Chung et al.; Bioinformatics 2005 21(22):4092-4100

I would love to use this program, which is uses phylogenetic trees as a
basis for probe design, but despite extensive searching, I can no longer
find it.  The URL quoted in the paper is no longer current.

thanks very much for any help

Mike Cox

Postdoctoral Research Associate
Division of Genomics and Molecular Microbiology
School of Biological Sciences
University of Liverpool
Crown Street
L69 7ZB

Office 0151 7954576
Lab 0151 7954580

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