[BiO BB] PISE interface for blast

[Shameer Khadar]

Dear Ethan,

I also need to impliment Pise interface for Several bioinfo program to be
used internally for a bioinformatics course. It will be nice If you can
explain - step-by-step .

Cheers,
Shameer Khadar


On 10/20/06, Ethan Strauss <ethan.strauss at promega.com> wrote:
>
>  Hi,
>     I am working with a PISE interface for BLAST right now. I don't
> pretend to be know what I am doing, but I am doing something :-)
>     Anyway, I could send you the interface I have and you could at least
> use it as a starting point. Alternately, you could take a look at
> http://www.pasteur.fr/recherche/unites/sis/Pise/XML/. There is an example
> there...
> Ethan
>
>  ------------------------------
> *From:* bio_bulletin_board-bounces+ethan.strauss=
> promega.com at bioinformatics.org [mailto:
> bio_bulletin_board-bounces+ethan.strauss=promega.com at bioinformatics.org] *On
> Behalf Of *Samantha Fox
> *Sent:* Thursday, October 19, 2006 10:40 AM
> *To:* The general forum at Bioinformatics.Org
> *Subject:* [BiO BB] PISE interface for blast
>
>
> Hi,
> any of you familiar with generating PISE interface for a database that I
> wish to blast.
> Do we have to write a separate xml for that ? Any help or suggestion would
> be welcome.
>
> Thanks,
> ~S
>
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