[BiO BB] php and seqret

Deepan codeshepherd at gmail.com
Sat Apr 21 05:08:59 EDT 2007

On Thu, 2007-03-29 at 15:09 +0100, Kim Clarke wrote:
> Hi folks,
> I'm a first year bioinformatics undergraduate nearing completion of my first
> year project. A quick question...I am writing a very simple web server using
> basic html and php. One section of the php deals with calling Seqret
> (EMBOSS) using exec(). Seqret is stored on the same file server and the
> command line instruction when ran in a terminal works fine. here is the
> snippet of code:
>    //exec("touch $pass_c");
>    exec("seqret embl:$accession $pass_c");
> both $accession and $pass_c work fine. Can anyone with experience of PHP and
> EMBOSS help me? is it a problem with file permissions?
> Kim

  What is the problem you face?  What errors do you get? What do you
find in log files? 

Deepan Chakravarthy N

Deciphering the source code of life...

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