[BiO BB] Can you explain theses results?

[Daniel Xavier de Sousa]

Hi for all

Please, you would see theses tests in serial machine, but important to cluster. 
What do you think about it?

Please look theses tests using BLASTP:

Length Seq Query  -- HITs -- TIME
10000                   -- 3    -- 8min51sec
10000                   -- 500  -- 7min41sec
----------------------------------
Length Seq Query  -- HITs -- TIME 
9000                      --  2   --
 7min11sec
9000                      --  500 -- 6min49sec
----------------------------------
Length Seq Query  -- HITs -- TIME
3000                      --  3   -- 2min54sec
3000                     --  500 -- 2min52sec

Theses
times are very strange. You can see which the sequence of 10000 bases
and 3 hits get more time than another sequence of 10000 bases but with
500 hits. So, I can conclude: BLASTP is not sensitive to similarity,
difference of BLASTN.

But the most important, why this happened? Can anybody explain theses results?

Thanks for all
Daniel
 
 
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*        Daniel Xavier de Sousa                    *
*        Mestrando em Informática - PUC-Rio        *
*        E-MAIL : dsousaARROBAinf.puc-rio.br       *
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