[BiO BB] all vs. all COGs?

[Martin Gollery]

I haven't seen anyone do this, Iddo, but I have an idea of how this
could be done. I have the COGs built into HMMs, and you could use
these together with an HMM-HMM comparison tool to get the distance
mappings.

Cheers,
Marty


On Dec 21, 2007 5:00 PM, Iddo Friedberg <idoerg at gmail.com> wrote:
> Hi,
>
> Is there an all-vs-all comparison of COGs out there? I am basically looking
> for a distance mapping based on profile alignments between COG families. Has
> this been done?
>
> thanks,
>
> Iddo
>
>
>
> --
>
> I. Friedberg
>
> "The only problem with troubleshooting is that
> sometimes trouble shoots back."
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>



-- 
-- 
Martin Gollery
Senior Bioinformatics Scientist
TimeLogic- a Division of Active Motif
775-833-9113
880 Northwood Blvd. Suite 7
Incline Village, NV 89451