[BiO BB] software

[Ryan Golhar]

For small molecules, the only open source structure builder I am aware of is
ghemical (See http://www.uku.fi/~thassine/projects/ghemical/)



> -----Original Message-----
> From: 
> bio_bulletin_board-bounces+golharam=umdnj.edu at bioinformatics.o
> rg 
> [mailto:bio_bulletin_board-bounces+golharam=umdnj.edu at bioinfor
> matics.org] On Behalf Of Balamurugan.R
> Sent: Wednesday, February 07, 2007 11:12 PM
> To: 'General Forum at Bioinformatics.Org'
> Subject: RE: [BiO BB] software
> 
> 
> You can try prodrg server if your molecule is small 
> http://davapc1.bioch.dundee.ac.uk/programs/prodrg/
> 
> 
> Thanks and Best Regards,
> Balamurugan.R
> -----Original Message-----
> From: bio_bulletin_board-bounces+rb=hcl.in at bioinformatics.org
> [mailto:bio_bulletin_board-bounces+rb=hcl.in at bioinformatics.or
g] On Behalf Of Joe Landman
Sent: Thursday, February 08, 2007 9:03 AM
To: General Forum at Bioinformatics.Org
Subject: Re: [BiO BB] software

sindhu sambandam wrote:
> hi
> does someone know good open source software to produce pdb structures 
> form chemical structures...

Do you mean primary protein sequence data from 3D structures, or 3D 
structures from primary sequence data?  Or do you mean something else 
entirely?



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Joseph Landman, Ph.D
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