[BiO BB] SNP analysis program
Hongyu Zhang
forward at hongyu.org
Wed Feb 14 16:22:27 EST 2007
Dear all,
I am looking for a SNP analysis program, which is good at
Assemble
chromats
Allow me to edit
chromats
Displays mixed
bases
Displays polymorphisms
calls
We have looked at Polyphred and Sequencher. Polyphred works well in
Linux/Unix, so it can be wrapped in a shell script to run in batch mode
processing bulk data. It is also in good compatibility with Phred/Phrap
and consed. Sequencher has nice GUI and runs on Windows, which is good
for scientist to do annotation interactively, but I am not sure whether
it can be run in batch mode.
If you have any good suggestions, please let me know. Thanks!
Hongyu Zhang, Ph.D.
Computational biologist
Ceres Inc., Thousand Oaks, CA
Cell: 805-405-5394
Fax: 866-447-8750
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