[BiO BB] Global sequence alignments

Shameer Khadar skhadar at gmail.com
Mon Feb 19 22:52:15 EST 2007

Try MALIGN by M.S. Johnson and you can obtain the %ID from the alignment
results itself.
If you dont have access to MAIGN, create ur alignment using any standard
tool and check the alignment statistics using ALISTAT (Part of Eddy's HMMER)

Shameer Khadar

On 2/17/07, Raj <rajkumar.bondugula at gmail.com> wrote:
> Hello all,
>       Can any one suggest me a downlodable program to perform global
> sequence alignment between two protein sequences and give me their
> sequence identity in percentage?
> Thank you for your time.
> Regards,
> Raj
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