[BiO BB] anyone know how to get the promoter sequence of mouse gene

[lichunjiang]

Hi Yan,
      Maybe cisRED which is
available from http://www.cisred.org/ and PROMSER which is available from
http://cagt.bu.edu/page/Promoser_about are helpful for you.

Good Luck!
Lichun

Li Xue wrote:
> Hi Yan,
> 
> The following link is to predict promoter region for
barley probeset.
> It is different from your problem in that
servers offered are mainly
> plant genome, but may offer some clue
of the steps.
>
http://gremlin1.gdcb.iastate.edu/~volker/teaching/bcb594.html
>

> Li
> 
> At 08:32 AM 2/27/2007, you wrote:
>>googling for mouse and promoter gives you this as first hit:
>>http://rulai.cshl.edu/CSHLmpd2/
>>batch queries are
possible as far as I remember.
>>
>>cheers,
>>Max
>>On 25/02/07, yzhang at vbi.vt.edu
<yzhang at vbi.vt.edu> wrote:
>>>anyone know if I have a
mouse gene(or human gene)'s gene accession #,
>>> how
>>>could I use this number to get promotor sequence of this
gene? or
>>> -1000bp
>>>sequence? How about
batch query?
>>>best
>>>yan
>>>
>>>_______________________________________________
>>>General Forum at Bioinformatics.Org -
>>>
BiO_Bulletin_Board at bioinformatics.org
>>>https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
>>_______________________________________________
>>General Forum at Bioinformatics.Org -
>>
BiO_Bulletin_Board at bioinformatics.org
>>https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
>>
> 
> 
> 
>
_______________________________________________
> General Forum at
Bioinformatics.Org -
> BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
> 
> 


-- 
lichunjiang at sibs.ac.cn
Institute of Biochemistry and Cell Biology,
Shanghai Institutes for
Biological Sciences,
Chinese Academy of Sciences