[BiO BB] Short peptide sequence comparison

Arne Christensen arnec at bio.umass.edu
Mon May 7 11:10:09 EDT 2007


I'm wondering if anyone can recommend an application to analyze the 
conservation between two short, <20 amino acids, with comprehensive 
information on charge, hydrophobicity, etc.

I have two sequences I believe are functionally conserved, but not 
particularly well conserved in terms of identity.  I'm trying to get 
to the bottom of the discrepancies in the pepties.

Thank you ,
arnec
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