[BiO BB] Sequence similarity
Sterten at aol.com
Sterten at aol.com
Wed May 16 12:50:29 EDT 2007
OK, I wrote one for influenza.
It's "beta" , description in bird-flu forums...
I could search for description, if someone is interested.
_http://magictour.free.fr/seqa.zip_ (http://magictour.free.fr/seqa.zip)
(C-sourcecode attached to the executable)
runs under Windows or DOS
seqa.exe (for viruses, 8 segments)
seq1.exe (for single segments)
qingh6.3w3 (Qinghai-viruses)
egy7s.10 (HA-Segments)
seqa qingh6.3w3 > xx
stores the lists of distances and mutations in file xx
seqa without Parameter gives Menu
extra Programme for Horizontal Sorting etc.
other files etc. on demand
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