[BiO BB] sequence analysis

[Martin Gollery]

No, the proteins are not too big, only about 20 MB.

Marty

On 10/23/07, Bryan Bishop <kanzure at gmail.com> wrote:
>
> "Of the protein sequences from human." Martin, it sounds like what
> Nikhil wants to do would require much more memory than textpad would be
> allowed to allocate. Right?
>
> - Bryan
>
> On Tuesday 23 October 2007 18:27, Martin Gollery wrote:
> > For an exact match you can simply use grep, or open the target in an
> > editor such as textpad and use the search function.
> >
> > Marty
> >
> > On 10/23/07, nikhil gadewal <ngadewal at yahoo.com> wrote:
> > > Hello all
> > >
> > >   I am interested to find tetramer peptide matching 100% to the
> > > carboxyl terminal of the protein sequences from human. Is there any
> > > specific tool available to do so.
> > >   Can BLAST or FASTA handle it by changing the parameters.
> > >
> > >   Thankyou in advance.
> > >
> > >   Nikhil
>


-- 
-- 
Martin Gollery
Senior Bioinformatics Scientist
TimeLogic- a Division of Active Motif
775-833-9113
880 Northwood Blvd. Suite 7
Incline Village, NV 89451