[BiO BB] sequence analysis
marty.gollery at gmail.com
Tue Oct 23 19:54:02 EDT 2007
No, the proteins are not too big, only about 20 MB.
On 10/23/07, Bryan Bishop <kanzure at gmail.com> wrote:
> "Of the protein sequences from human." Martin, it sounds like what
> Nikhil wants to do would require much more memory than textpad would be
> allowed to allocate. Right?
> - Bryan
> On Tuesday 23 October 2007 18:27, Martin Gollery wrote:
> > For an exact match you can simply use grep, or open the target in an
> > editor such as textpad and use the search function.
> > Marty
> > On 10/23/07, nikhil gadewal <ngadewal at yahoo.com> wrote:
> > > Hello all
> > >
> > > I am interested to find tetramer peptide matching 100% to the
> > > carboxyl terminal of the protein sequences from human. Is there any
> > > specific tool available to do so.
> > > Can BLAST or FASTA handle it by changing the parameters.
> > >
> > > Thankyou in advance.
> > >
> > > Nikhil
Senior Bioinformatics Scientist
TimeLogic- a Division of Active Motif
880 Northwood Blvd. Suite 7
Incline Village, NV 89451
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