[BiO BB] sequence analysis

Dr. Christoph Gille christoph.gille at charite.de
Wed Oct 24 03:17:08 EDT 2007

You could use fgrep. Fgrep is faster than grep.

Before, you should transform the database file such that
each sequence takes one line without blank and without
line breaks (using tr and sed)

Database files are optimized for hole cards for
historical reasons. Lines are  wrapped after at least after 72
characters, preventing the use of fgrep.

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