[BiO BB] need help on HMM(Hidden Markov Model) package

[Joe Landman]

Xue Li wrote:
> Hello all,
> 
> Does anyone know some good HMM(Hidden Markov Model) package? It would be
> perfect if it is written in Perl, or can be called in Perl.

HMMer (http://hmmer.janelia.org/) is one of the standard tools, and it 
can be used from within BioPerl (http://www.bioperl.org/wiki/Main_Page) 
fairly easily  (see 
http://doc.bioperl.org/releases/bioperl-current/bioperl-live/Bio/SearchIO/hmmer.html 
)

> Thank a lot!

Joe



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