[BiO BB] BPSS1528
Dr. Christoph Gille
christoph.gille at charite.de
Thu Aug 28 14:22:08 EDT 2008
There is no close Blast match of
UNIREF:A3NLD1 Putative uncharacterized protein
with PDB
The top blast hit is attributed to composition and does not prove homology. Forget the low E-value.
There is lots of Proline which is a strong attractor in sequence alignments.
1> PDB:1Y0F_A mol:protein length:1054 COLLAGEN I ALPHA 1 (NEW)
Score = 135 (52.599998474121094), Expect = 1.7999999499807018E-6
Identities = 30/258, Positives = 36/258
Therefore one could try
http://tardis.nibio.go.jp/fugue/
Hope this helps
Christoph
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