[BiO BB] protein function prediction using protein interaction network
Gaurav Pandey
pandey.gaurav at gmail.com
Tue Dec 2 14:04:41 EST 2008
Hi Huang,
There are several easy to implement computational approaches to predict
gene/protein function from interaction networks. Take a look at Section 8 of
a survey we have written on function prediction techniques (
http://www-users.cs.umn.edu/~kumar/papers/survey.php), which discusses
several such approaches for protein interaction networks. Also, feel free to
contact me at gaurav at cs.umn.edu, and I might be able to share with you an
implementation of the FunctionalFlow algorithm (Nabieva et al, ISMB 2005),
which is popular for this problem.
Good luck,
Gaurav
On Fri, Nov 28, 2008 at 7:27 AM, Kie Kyon Huang <kiekyon.huang at gmail.com>wrote:
> hi everyone,
>
> i would like to know if anyone knows of software that can infer function
> for
> uncharacterised gene using protein interaction network?
>
> thanks
>
> Huang
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--
Gaurav Pandey Email: gaurav at cs.umn.edu
Computer Science Department Webpage: www.cs.umn.edu/~gaurav
University of Minnesota Tel: 612-701-2494
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