[BiO BB] sequence clustering

[Martin Gollery]

There are many programs for clustering ESTs or other nucleic
sequences. Try blastclust, D2 or Cap3 for starters.

Martin Gollery

On Wed, Dec 3, 2008 at 1:18 AM, T Joshi <tejalonline at gmail.com> wrote:
> Hi,
> I would like to know if there are any tools/software for clustering
> DNA sequences. I searched for them, but mostly I ended up with those
> which work on protein sequences.  If there is any bioconductor package
> which also could work with sequence data, it would be good to know.
>
> Thanks
> Josh
>
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Martin Gollery
Senior Bioinformatics Scientist