[BiO BB] finding repeat sequences
svtrived at hotmail.com
Tue Dec 9 12:38:47 EST 2008
One program is SPUTNIK at the following link http://espressosoftware.com/pages/sputnik.jsp
but one will have to modify it a bit to take longer sequences as it analyzes only short seq. You can also use the online version of the same at http://cbi.labri.fr/outils/Pise/sputnik.html.
The modified version of this program is available possibly with MORGANTE
MICHELE michele.morgante at dpvta.uniud.it as indicated in the following link http://bioinf.dimi.uniud.it/software/software/sputnik. However, do not know the drawbacks of this modified version.
> Date: Mon, 8 Dec 2008 09:55:11 -0800
> From: idoerg at gmail.com
> To: bbb at bioinformatics.org
> Subject: Re: [BiO BB] finding repeat sequences
> On Fri, Dec 5, 2008 at 9:05 PM, jalil fallah <jalil.fallah at gmail.com> wrote:
> > Dear all ,
> > I was wondering if you would mind answering my request.
> > How could I access to a software or a database to find tandem repeat
> > sequences in a prokaryotic gene ?
> > Thank you in advance
> > --
> > Jalil Fallah
> > Ph.D Candidate of Medical Bacteriology
> > Dep. of Bacteriology
> > School of Medicine
> > Tarbiat Modarres University
> > Tehran - Iran
> > P.O.Box 14115-331
> > Cell Phone +98- 912- 5093060
> > _______________________________________________
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