[BiO BB] how to compare biological distance between four proteins

Wed Jun 4 17:21:02 EDT 2008

I could not find 1AAI in http://www.ebi.ac.uk/pdbsum/
Is it mistyped?

Anyway click

http://www.charite.de/bioinf/strap/ce.php?align=PDB%3A1aai%3AA+PDB%3A1rzo%3AC+PDB%3A1uq5%3AA+PDB%3A1uq4%3AA

Click the tool button "Op-tions" at the bottom and activate check-box "Full
functionality" to activate the menu-bar.

Menu-bar->Analyze->Compare proteins

You could select either rmsd-value or TM-align score or CE-score or
clustalw-score.

Is it what you need?

> Hello all,
>
> I have four proteins. 1AAI:A 1RZO:C 1UQ5:A 1UQ4:A
>
> Only 1RZO:C,  1UQ5:A and 1UQ4:A have Uniprot accession No.
>
> 1RZO:C is P06750
> 1UQ5:A and 1UQ4:A are P02879
>
> I am interested in comparing biological distance of 1AAI:A with the other
> three. Would some one please tell me how to do that?
>
> Thanks a lot.
>
> --
> Xue, Li
> Bioinformatics and Computational Biology program @ ISU
> Ames, IA 50010
> 515-450-7183
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