[BiO BB] How to get the special Transcription Factor target sequences?

[Jinyan Huang]

Thank you very much for your suggestion.

It is easy to registrate on gene-regulation.com. But when I browse the
TRANSFAC database, it links to http://www.biobase-international.com/.
For a free trial, it must finish a registration form. It is hard to
pass this registration form. It is like this
http://www.biobase-international.com/pages/index.php?id=456.


In JARSPAR I can not find the factors which I interested

no profiles in JASPAR satisfies search criteria



2008/5/29 lichunjiang <lichunjiang at sibs.ac.cn>:
>
>
> Really? I registrated for gene-regulation.com a couple of years ago, it is
> quite easy.�It does not make sense that you can not register. Or you
> should just write to the service to fix the problem.
>
> Actually,
> it is free to use a reduced version. For the full professional version,
> you need to pay.
>
> Besides Transfac, I recommend another
> database: JARSPAR available at http://jaspar.genereg.net/.�It is
> totally free to use.
> Hope this help.
> Good luck!
>
>
>
>> It seems it is hard to pass the  registration.
>>
>> 2008/5/28 J Greenbaum <jgbaum at gmail.com>:
>>> The
> Transfac database (www.gene-regulation.com/pub/databases.html)
>>> should have what you are looking for...
>>>
>>> Jason Greenbaum
>>> Postdoctoral Fellow
>>>
> La Jolla Institute for Allergy & Immunology
>>>
>>> 2008/5/27 Jinyan Huang <hiekeen at gmail.com>:
>>>> I want to get the Transcription Factor target sequences.
> They are
>>>>
> Oct4 $B!$ (BSox2 $B!$ (BcMyc $B!$ (BKlf4 $B!$ (BNanog $B!$ (BLin28.
>>>> Is there such free database? Or should I just search it one
> by one
>>>> from the literature?
>>>>
>>>>
>>>> --
>>>> Best regards,
>>>> Jinyan Huang (ekeen)
>>>> School of Life
> Sciences and Technology, 1302 Room
>>>> Tongji University
>>>> Siping Road 1239, Shanghai 200092
>>>> P.R.
> China
>>>> Tel :0086-21-65981041
>>>> Msn:
> hiekeen at hotmail.com
>>>> eMail: hiekeen at gmail.com
>>>>
>>>>
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>>>
>>>
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>>
>
>>
>>
>> --
>> Best regards,
>>
> Jinyan Huang (ekeen)
>> School of Life Sciences and Technology,
> 1302 Room
>> Tongji University
>> Siping Road 1239, Shanghai
> 200092
>> P.R. China
>> Tel :0086-21-65981041
>> Msn:
> hiekeen at hotmail.com
>> eMail: hiekeen at gmail.com
>>
>> _______________________________________________
>> BBB
> mailing list
>> BBB at bioinformatics.org
>>
> http://www.bioinformatics.org/mailman/listinfo/bbb
>>
>>
>
>
>
> --
> lichunjiang at sibs.ac.cn
> Institute of
> Biochemistry and Cell Biology,
> Shanghai Institutes for Biological
> Sciences,
> Chinese Academy of Sciences
>
> _______________________________________________
> BBB mailing list
> BBB at bioinformatics.org
> http://www.bioinformatics.org/mailman/listinfo/bbb
>
>



-- 
Best regards,
Jinyan Huang (ekeen)
School of Life Sciences and Technology, 1302 Room
Tongji University
Siping Road 1239, Shanghai 200092
P.R. China
Tel :0086-21-65981041
Msn: hiekeen at hotmail.com
eMail: hiekeen at gmail.com