[BiO BB] How to get the special Transcription Factor target sequences?

[Alexander Kel]

Hi all,

To use the free public TRANSFAC
please, click at:
http://www.gene-regulation.com/pub/databases.html

on the third item in the list:
"Search TRANSFAC Public"
http://www.gene-regulation.com/cgi-bin/pub/databases/transfac/search.cgi

Sorry, for the confusion. Our sales and marketing made a good
effort to put the Transfac professional at the top of the list :)
But still the public version is available.

Alexander




On Thu, May 29, 2008 at 3:23 AM, Jinyan Huang <hiekeen at gmail.com> wrote:
> Thank you very much for your suggestion.
>
> It is easy to registrate on gene-regulation.com. But when I browse the
> TRANSFAC database, it links to http://www.biobase-international.com/.
> For a free trial, it must finish a registration form. It is hard to
> pass this registration form. It is like this
> http://www.biobase-international.com/pages/index.php?id=456.
>
>
> In JARSPAR I can not find the factors which I interested
>
> no profiles in JASPAR satisfies search criteria
>
>
>
> 2008/5/29 lichunjiang <lichunjiang at sibs.ac.cn>:
>>
>>
>> Really? I registrated for gene-regulation.com a couple of years ago, it is
>> quite easy.�It does not make sense that you can not register. Or you
>> should just write to the service to fix the problem.
>>
>> Actually,
>> it is free to use a reduced version. For the full professional version,
>> you need to pay.
>>
>> Besides Transfac, I recommend another
>> database: JARSPAR available at http://jaspar.genereg.net/.�It is
>> totally free to use.
>> Hope this help.
>> Good luck!
>>
>>
>>
>>> It seems it is hard to pass the  registration.
>>>
>>> 2008/5/28 J Greenbaum <jgbaum at gmail.com>:
>>>> The
>> Transfac database (www.gene-regulation.com/pub/databases.html)
>>>> should have what you are looking for...
>>>>
>>>> Jason Greenbaum
>>>> Postdoctoral Fellow
>>>>
>> La Jolla Institute for Allergy & Immunology
>>>>
>>>> 2008/5/27 Jinyan Huang <hiekeen at gmail.com>:
>>>>> I want to get the Transcription Factor target sequences.
>> They are
>>>>>
>> Oct4 $B!$ (BSox2 $B!$ (BcMyc $B!$ (BKlf4 $B!$ (BNanog $B!$ (BLin28.
>>>>> Is there such free database? Or should I just search it one
>> by one
>>>>> from the literature?
>>>>>
>>>>>
>>>>> --
>>>>> Best regards,
>>>>> Jinyan Huang (ekeen)
>>>>> School of Life
>> Sciences and Technology, 1302 Room
>>>>> Tongji University
>>>>> Siping Road 1239, Shanghai 200092
>>>>> P.R.
>> China
>>>>> Tel :0086-21-65981041
>>>>> Msn:
>> hiekeen at hotmail.com
>>>>> eMail: hiekeen at gmail.com
>>>>>
>>>>>
>> _______________________________________________
>>>>> BBB
>> mailing list
>>>>> BBB at bioinformatics.org
>>>>>
>> http://www.bioinformatics.org/mailman/listinfo/bbb
>>>>>
>>>>
>>>>
>> _______________________________________________
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>> list
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>>>>
>> http://www.bioinformatics.org/mailman/listinfo/bbb
>>>>
>>>
>>
>>>
>>>
>>> --
>>> Best regards,
>>>
>> Jinyan Huang (ekeen)
>>> School of Life Sciences and Technology,
>> 1302 Room
>>> Tongji University
>>> Siping Road 1239, Shanghai
>> 200092
>>> P.R. China
>>> Tel :0086-21-65981041
>>> Msn:
>> hiekeen at hotmail.com
>>> eMail: hiekeen at gmail.com
>>>
>>> _______________________________________________
>>> BBB
>> mailing list
>>> BBB at bioinformatics.org
>>>
>> http://www.bioinformatics.org/mailman/listinfo/bbb
>>>
>>>
>>
>>
>>
>> --
>> lichunjiang at sibs.ac.cn
>> Institute of
>> Biochemistry and Cell Biology,
>> Shanghai Institutes for Biological
>> Sciences,
>> Chinese Academy of Sciences
>>
>> _______________________________________________
>> BBB mailing list
>> BBB at bioinformatics.org
>> http://www.bioinformatics.org/mailman/listinfo/bbb
>>
>>
>
>
>
> --
> Best regards,
> Jinyan Huang (ekeen)
> School of Life Sciences and Technology, 1302 Room
> Tongji University
> Siping Road 1239, Shanghai 200092
> P.R. China
> Tel :0086-21-65981041
> Msn: hiekeen at hotmail.com
> eMail: hiekeen at gmail.com
> _______________________________________________
> BBB mailing list
> BBB at bioinformatics.org
> http://www.bioinformatics.org/mailman/listinfo/bbb
>



-- 
Alexander Kel, PhD
SVP R&D
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